Weblibrary (BiocParallel) nCores = 2 # For cRAN build register (MulticoreParam (nCores)) Now estimate the \(R^2\), also a rough estimate of the computation time is given. Remember to provide the cluster for multithreading. R2lm = R2oosse (y = Brassica $ Pheno $ Leaf_8_width, x = Brassica $ Expr[, 1: 10], fitFun = fitFunLM, predFun = predFunLM) WebDec 29, 2024 · package ‘BiocParallel’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\xxx\AppData\Local\Temp\RtmpkfKtAO\downloaded_packages
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WebRegularised linear models. As first example, we use the cv.glmnet function from the glmnet package, which includes internal cross-validation for tuning the penalty parameter. Following custom function definitions are needed to fit in with the naming convention of the oosse package.. The fitting model must accept at least an outcome vector y and a regressor … import stat blocks to roll20
Differences in the network structure of CRAN and BioConductor
WebNov 8, 2024 · BatchJobsParam-class: Enable parallelization on batch systems BatchtoolsParam-class: Enable parallelization on batch systems BiocParallel-package: Bioconductor facilities for parallel evaluation BiocParallelParam-class: BiocParallelParam objects bpaggregate: Apply a function on subsets of data frames bpiterate: Parallel … WebBiocParallel DOI: 10.18129/B9.bioc.BiocParallel Bioconductor facilities for parallel evaluation Bioconductor version: Release (3.16) This package provides modified … The sva package contains functions for removing batch effects and other … DOI: 10.18129/B9.bioc.DiffBind Differential Binding Analysis of ChIP-Seq Peak … DOI: 10.18129/B9.bioc.Rsamtools Binary alignment (BAM), FASTA, variant call … DOI: 10.18129/B9.bioc.GenomicDataCommons … DOI: 10.18129/B9.bioc.scater Single-Cell Analysis Toolkit for Gene Expression … DOI: 10.18129/B9.bioc.minfi Analyze Illumina Infinium DNA methylation … Framework for processing and visualization of chromatographically separated and … Contains a set of functions to perform large-scale analysis of pharmaco-genomic … Coordinated Gene Activity in Pattern Sets (CoGAPS) implements a Bayesian … A differential abundance analysis for the comparison of two or more conditions. … WebMultithreading is used automatically using the BiocParallel package. Change the following setup depending on your system. library(BiocParallel) nCores = 2 # For cRAN build … import statement for collections in java